Negi Springfield starts his first day as a teacher of an all-girls middle school class in this series remake. The girls are introduced, and some background is given about Negi's father and Evangeline.

Asuna confronts Negi about his magic and learns about the basics of a Provisional Contract, while more of Evangeline's past and purposes are explained. Meanwhile, Class 2-A discusses the mysteries behind the vampire attacks without any clue to who (or what) it could be.

With the full moon, Evangeline has enough power to force a showdown with Negi. As Negi gets pursued by Evangeline, Asuna agrees to help Negi out by using the Pactio, but that means she will have to kiss him! Will that be enough to withstand Evangeline's attacks?

Negi helps Takahata investigate some mysterious phonomena in the form of dark clusters on campus. Asuna hosts the inaugural meeting of the Chupacabra Research Group as she and the girls search for the evasive creature. Meanwhile, two spirits from the Magic Academy arrive with some news about a missing Star Crystal, but they also plan to watch that Negi doesn't use magic in front of the girls!

Negi explains his situation to Nodoka and she agrees to form a pactio with him. Asuna sets up another hunt for the chupacabra, while Konoka skips out to attend the Astronomy / Fortune Telling Club. But the dark fairy’s magic is still at large and somehow Konoka and Setsuna become entangled in the mess!

The evil fairy has transported Negi and the girls to another dimension to do battle, but this time the fairy has taken control over three of their classmates. Negi pulls cards for Asuna, Nodoka, and Konoka, but in order to increase his chances for success he may have to resort to kissing the proud but unwilling bodyguard, Setsuna!

Negi tries out his magic that allows him to see spirits and make visual contact with Sayo Aisaka the ghost girl. While Asuna tries to sell her Chupacabra T-shirts to her fellow students, Sayo starts wandering into the girls' dorm and visits all the rooms, causing all sorts of paranormal activites to happen. Kazumi of the Journalism Club intends on exposing the secret, while Negi tries to catch Sayo without revealing his own secret.

The Narutaki Twins try to prove to everyone that they are adult-like rather than children. Meanwhile Negi and his partners go to Library Island to research a gem left behind from the fairy incident.

Negi and his partners go camping to train in magic and to prepare for new threats.

Ayaka wonders whats up with the chupa team and why she wasn't invited to go camping with them. Meanwhile, the fairy takes control of 4 students to finish off Negi and his partners for good.

Negi, Asuna and the Chupa Team start a hunt to find the Black Rose Baron but can they find him before arousing suspicion that Negi is really a mage?

Yue has found out about Negi being a mage but refuses to form a pactio with him. Can Negi form a pactio with Yue before Shichimi and Motsu find out that Negi's secret is out?

All of Class 3-A has found out about Negi's secret about being a mage and because of this, Negi is punished by being transformed into a chupacabra. Even worse is that Class 3-A has been transported to the World of Illusions. How will Class 3-A get out of this situation?

Class 3-A is still stuck in the World of Illusions and now they have to figure out how to change Negi back into a human as well as find a way to get back to their own world.

Negi and Class 3-A were able to escape from the World of Illusions only to find themselves in another alternate dimension where Mahora Academy lay in ruins. Now Negi and Class 3-A must adapt to life in the alternate dimension until they can find a way to return home.

An argument between Asuna and Ayaka results in competition in a series of challenges. However, when a Dark Seed magic appears, Ayaka recalls her friendship with Asuna and uses her Armor form to rescue her.

Asuna and Konoka are about to take a bath but before they could, they stumble onto Nekane Springfield, Negi's older sister. Konoka and Setsuna find it to be a bit strange for Nekane to just appear in the World of Illusions and decided to investigate Nekane's sudden appearance.

The Black Rose Baron's identity has been revealed and all of Class 3-A knows it except that the Black Rose Baron doesn't know that the class knows. Konoka and the others decided to keep their knowledge of it a secret from him but will they be able to stop Asuna's big mouth from blowing their cover?

With almost all of class 3-A in Suka form with child-like behavior, Negi becomes a babysitter.

Evangeline starts having headaches when she, Chachamaru and Takamichi were investigating over Class 3-A's sudden transformation into their Suka forms. After resting, Evangeline grows into a 50 foot tall giant and decides to sleep at the roof of the school. Can Negi find someway to get Evangeline away from the school before it collapses?

Yue starts to realize that she is in love with Negi while Chachamaru and Evangeline find themselves stranded in their cabin when it mysteriously moves onto a lone island at sea.

The evil power harrassing the group suddenly increases activity just when a valuable tip from Chizuru reveals the mastermind behind the Star Crystals. Lingshen Chao's Armor Card power is revealed, while Eva falls prey to the Star Crystals.

The Star Crystal Thief, posessing Evangeline through the Star Crystal, turns Asuna against Negi and many of his allies into stone. But with the help of his remaining students, he's able to defeat her by Pactio with the vampire, which (alongside Chachamaru), completes his Pactio collection but not get them out of trouble.

Negi becomes trapped in a magical dimension where the controlled star crystal thief tries to destroy him, but with the assistance of all of his students, he is finally able to stop the thief and allow everyone to escape from the magical wasteland.

Class 3-A keeps watch on Anya while preparing the school for a big party! Meanwhile, Negi decides to investigate the mysterious light that helped him avoid being trapped in the Star Crystal forever.

Negi thanks his class by giving them a day in their Pactio forms. But when a mysterious black rose appears, he becomes convinced that his father Nagi is still out there...